LOCUS       MDD3266705               284 aa            linear   ENV 17-FEB-2023
DEFINITION  MAG: alpha-1,2-fucosyltransferase [Burkholderiales bacterium].
ACCESSION   MDD3266705
VERSION     MDD3266705.1
DBLINK      BioProject: PRJNA900590
            BioSample: SAMN32734490
DBSOURCE    accession JAQUVM010000034.1
KEYWORDS    ENV; Metagenome Assembled Genome; MAG.
SOURCE      Burkholderiales bacterium (landfill metagenome)
  ORGANISM  Burkholderiales bacterium
            Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria;
            Burkholderiales.
REFERENCE   1  (residues 1 to 284)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Microbial methane cycling in a landfill on a decadal time scale
  JOURNAL   Unpublished
REFERENCE   2  (residues 1 to 284)
  AUTHORS   Gregoire,D.S., George,N.A. and Hug,L.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-JAN-2023) Biology, University of Waterloo, 200
            University Ave, Waterloo, ON N2L3G1, Canada
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Date          :: 01-OCT-2020
            Assembly Method        :: SPAdes v. 3.15.5
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: 3.20x
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 02/11/2023 02:55:25
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.4
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 2,184
            CDSs (total)                      :: 2,149
            Genes (coding)                    :: 2,132
            CDSs (with protein)               :: 2,132
            Genes (RNA)                       :: 35
            tRNAs                             :: 32
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 17
            CDSs (without protein)            :: 17
            Pseudo Genes (ambiguous residues) :: 0 of 17
            Pseudo Genes (frameshifted)       :: 3 of 17
            Pseudo Genes (incomplete)         :: 12 of 17
            Pseudo Genes (internal stop)      :: 3 of 17
            Pseudo Genes (multiple problems)  :: 1 of 17
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Burkholderiales bacterium"
                     /isolate="STD2_167"
                     /isolation_source="NEUS_D2 leachate from a leachate well
                     at an active municipal landfill in the North Eastern
                     United States"
                     /db_xref="taxon:1891238"
                     /environmental_sample
                     /geo_loc_name="USA"
                     /lat_lon="38.96 N 75.67 W"
                     /collection_date="2019-02-12"
                     /metagenome_source="landfill metagenome"
                     /note="metagenomic"
     Protein         1..284
                     /product="alpha-1,2-fucosyltransferase"
     CDS             1..284
                     /locus_tag="PHC75_05940"
                     /coded_by="complement(JAQUVM010000034.1:18998..19852)"
                     /inference="COORDINATES: protein motif:HMM:NF013681.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /transl_table=11
ORIGIN      
        1 mqiiwclggl gnqmfqyafy rslqlsgkea rlyigefdsy slhngfelkn ifnlnpktig
       61 adsnfvnfks nkllkifkni lknlriysye inqdefnfne kyqsyklthy ltgywqseky
      121 fkgfekqirg dfifppldds nklladkias snsvslhirm gdyvnhpihg gictleyykk
      181 aieiirnnva dpeffifsnd idwcrnnlll esatyitgne gansykdmhl mslckhniia
      241 nssfswwgsw lnnnqnkivv apkkwfndlt intrdllpek wiki
//